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Developing a Disease Outbreak Event Corpus

Developing a Disease Outbreak Event Corpus

the number of outbreak events described in the text (A full description of the annotation scheme, and all associated software can be downloaded from the project Google Code site [9]).

Mike Conway, Ai Kawazoe, Hutchatai Chanlekha, Nigel Collier

J Med Internet Res 2010;12(3):e43

Clinical Text Data in Machine Learning: Systematic Review

Clinical Text Data in Machine Learning: Systematic Review

The data properties considered included their size, provenance, collection methods, annotation, and any relevant statistics.

Irena Spasic, Goran Nenadic

JMIR Med Inform 2020;8(3):e17984

Promoting Reproducible Research for Characterizing Nonmedical Use of Medications Through Data Annotation: Description of a Twitter Corpus and Guidelines

Promoting Reproducible Research for Characterizing Nonmedical Use of Medications Through Data Annotation: Description of a Twitter Corpus and Guidelines

, annotation guidelines that may be used for future annotation efforts, and a large annotated dataset involving various abuse-prone medications that we envision will drive community-driven data science and NLP research on the topic.

Karen O'Connor, Abeed Sarker, Jeanmarie Perrone, Graciela Gonzalez Hernandez

J Med Internet Res 2020;22(2):e15861

Cameras for Public Health Surveillance: A Methods Protocol for Crowdsourced Annotation of Point-of-Sale Photographs

Cameras for Public Health Surveillance: A Methods Protocol for Crowdsourced Annotation of Point-of-Sale Photographs

This paper focuses on category 2, large-scale data analysis, namely the annotation of photographs. Photographs of the retail environment provide a good test case for crowdsourced annotation because they consist of complex scenes full of fine detail.

Vinu Ilakkuvan, Michael Tacelosky, Keith C. Ivey, Jennifer L Pearson, Jennifer Cantrell, Donna M Vallone, David B. Abrams, Thomas R Kirchner

JMIR Res Protoc 2014;3(2):e22

Developing Embedded Taxonomy and Mining Patients’ Interests From Web-Based Physician Reviews: Mixed-Methods Approach

Developing Embedded Taxonomy and Mining Patients’ Interests From Web-Based Physician Reviews: Mixed-Methods Approach

However, in this study, we use a mixed-methods approach consisting of a literature review, data-driven-based topic discovery, and human annotation approaches to rigorously and systematically develop a physician review taxonomy.

Jia Li, Minghui Liu, Xiaojun Li, Xuan Liu, Jingfang Liu

J Med Internet Res 2018;20(8):e254

Interactive Web-Based Resource for Annotation of Genetic Variants Causing Hereditary Angioedema (HADA): Database Development, Implementation, and Validation

Interactive Web-Based Resource for Annotation of Genetic Variants Causing Hereditary Angioedema (HADA): Database Development, Implementation, and Validation

Nevertheless, these resources are ill-adapted to current NGS technologies and to the evolving knowledge of the genetic causes of HAE.To fill this gap, we here present the Hereditary Angioedema Database Annotation (HADA) tool, a freely accessible, user-friendly

Alejandro Mendoza-Alvarez, Adrián Muñoz-Barrera, Luis Alberto Rubio-Rodríguez, Itahisa Marcelino-Rodriguez, Almudena Corrales, Antonio Iñigo-Campos, Ariel Callero, Eva Perez-Rodriguez, Jose Carlos Garcia-Robaina, Rafaela González-Montelongo, Jose Miguel Lorenzo-Salazar, Carlos Flores

J Med Internet Res 2020;22(10):e19040

Smartphones as Multimodal Communication Devices to Facilitate Clinical Knowledge Processes: Randomized Controlled Trial

Smartphones as Multimodal Communication Devices to Facilitate Clinical Knowledge Processes: Randomized Controlled Trial

A number of clinical information systems allow for the annotation of clinical images [29-31]; annotation refers to marking, drawing, highlighting, labeling, or otherwise describing (and enriching) aspects of visual material that should be the focus of attention

Christoph Pimmer, Magdalena Mateescu, Carmen Zahn, Urs Genewein

J Med Internet Res 2013;15(11):e263